Six stages. One verifiable chain of custody.

1. 01

   Ingest

   Universal Envelope

   Every input — raw FASTA, DwC-A archive, drafted manuscript — becomes a cryptographically trackable object. Automatic file-type detection and metadata extraction.

2. 02

   Analyze

   Large Data Collider

   The LDC runs image QC, taxonomy reconciliation, and FAIR validation over millions of reads in minutes. Outputs operational taxonomic units and candidate novel lineages.

3. 03

   Draft

   AI-assisted narrative

   The scientist directs; the AI drafts structure and links LDC data directly into the text. Cross-references with external hypotheses in real time.

4. 04

   Review

   Multi-agent panel

   AI pre-screens manuscript structure and methodology in hours. Verified human experts evaluate contextual scientific nuance. Weighted, transparent scoring.

5. 05

   Broadcast

   Interactive StoryMap

   The end product is not a dead PDF. It is an explorable digital artifact permanently tethered to its underlying FAIR data package (GBIF, NCBI SRA, Zenodo).

6. 06

   Amplify

   Press · human-approved

   Publishing is the starting line, not the finish. Once a result is live, Press can coordinate a human-approved, platform-neutral share campaign for that release — never automatically, and only after publication.

COMPUTE ENGINE

BioInfoOS

The software layer running on the BioKEA Large Data Collider (LDC) — and, as part of BioKEA Works, a compute product approved researchers can use directly. In-house AI-assisted modules cover:

• · Extraction-run QC (Claude Vision over plate images)
• · Taxonomy reconciliation against BOLD, NCBI, and GBIF
• · FAIR (Findable, Accessible, Interoperable, Reusable) package validation — DwC-A, Darwin Core, Zenodo DOI-ready
• · Draft narrative generation tethered to pipeline outputs
• · Operational Taxonomic Unit (OTU) clustering, amplicon denoising, and chimera filtering

Modules ship incrementally; BioInfoOS is in closed-testing alpha and runs on the same LDC hardware used by the molecular sequencing service.

PUBLISHED VIA

Press

Pipeline outputs publish through Press, part of the BioKEA Works suite — submission, peer review, and public release, including Agentis, an evidence-backed review capability. In closed-testing alpha.

TRUST

Cryptographic provenance, end to end.

Every artifact carries a verifiable record of exactly how it was produced — a Result Manifest. Every peer review is a signed, verifiable record. The pipeline doesn't just produce findings — it produces evidence that's re-derivable from raw input to published claim, by anyone, at any time.